16S-23S-5S rRNA Database

Indian Institute of Technology Hyderabad, Telangana, India

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Genome Statistics for assembly GCA_000007085.1

Organism Name
Caldanaerobacter subterraneus subsp. tengcongensis MB4
NCBI Assembly ID
GCA_000007085.1 NCBI Link
NCBI Taxid
273068 NCBI Link
Taxonomy
Superkingdom :
Bacteria
Phylum :
Bacillota
Class :
Clostridia
Order :
Thermoanaerobacterales
Family :
Thermoanaerobacteraceae
Genus :
Caldanaerobacter
Species :
subterraneus
Strain :
MB4
Genome size
2.689 Mb
Number of chromosomes
1
Number of plasmids
0
GC percentage
37.57%
Number of Genes
2727
Number of rRNA Copies
16S copies :
4
23S copies :
4
5S copies :
4
Number of tRNA
56
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The 16S rRNA (red), 23S rRNA(green), and 5S rRNA (black) in the genome of Caldanaerobacter subterraneus subsp. tengcongensis MB4

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More info on 16S
More info on 23S
More info on 5S

16S rRNA of Caldanaerobacter subterraneus subsp. tengcongensis MB4

All 16S rRNA sequences Sequence alignment file Structure alignment file

16S Matrix

Accession Identifier TTE_RS00245 TTE_RS00390 TTE_RS07280 TTE_RS10765
NC_003869 TTE_RS00245 100.0 98.893 92.109 99.87
NC_003869 TTE_RS00390 98.893 100.0 92.993 99.023
NC_003869 TTE_RS07280 92.109 92.993 100.0 92.109
NC_003869 TTE_RS10765 99.87 99.023 92.109 100.0 
# STOCKHOLM 1.0
#=GF AU Infernal 1.1.5

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         TAATTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcctcgtgtcTTGGCAGGTTTAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTTGAGACCGGGATAACCCTGGGAAACTGGGGCTAATACCGGATACGCTCCCTCtAGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *********************************************************************9977777763...445555555567777779999*******************************************************************************************9999**
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
#=GC SS_cons                                                  ::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{----{{{-{{{,,<<<--<<<<<-<<<<<<<____~~~~~~~~~~>>>>>>>->>->>>>>>,,,,,,[[[,,,,,,((((((((--((---(((((((,<<<<----<<<<<<<____>>>>>>>----->>>>,,,,,<<<<<<<.<<<__
#=GC RF                                                       uuuauggAGaGuuUGAUCcUggCuCAGggcGaaCGCuGGCGGcgcGcuUaAcaCAuGCAAGuCGAgccccacggggccuuaa~~~~~~~~~~ggccccgagguggcGgCGaAcGGGuGAGUAAcgCGcgggcAAccUacCcccgggugcgggAUAccccccgGAAAcggggggUAAUAccgcAUaaugccccgg.gccgu

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         ATCCTgGAGGGAGGAAA.GGTagcgcAAGCTGCCGCTCAAGGATGGGCCCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTGGGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP **9999***********.****998666666*************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
#=GC SS_cons                                                  __>>>.>>>>>>>,,,,.<<<....._____>>>,)))))))--))))))))))<<<--<-<<<--<<<<<<<<_______>>>>>>>>>>>----->>>>,,<<<<<<<<____>>>>--->>>>]]],<<<<<<__________>>>>>>,<<<<____>>>>,,,}}}}}}-},,,,,<-<<<---<<<<<____>>
#=GC RF                                                       auggc.ccggggcuAAA.Ggc.....auuuagcCGcccgggGAugggcccgCGccccAUcAGcuaGuuGGuggGGUAAuGGCccaCCaaggCgAuGAggggUAGccGgccuGAGAgggcGauCggCCaCAcuGGgaCUGAGAcACGgcCCagACuCCUACGGGaGGCAGCaGugggGAAUauUgcgCAAugGgcGaAAgc

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CTGACGGAGCGACGCCGCGTGAGCGAAGAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CTGACGGAGCGACGCCGCGTGAGCGAATAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CTGACCCAGCGACGCCGCGTGGGGGATGAAGGCCTGCGGGTCGTAAACCCCTGTCGGAAGGGACGATGCTCTAAGGggtgaacaGCCTCTTAGAGTGACGGTACCTTCCAAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTCACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *************************************************************************99999999876666666**************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CTGACGGAGCGACGCCGCGTGAGCGAAGAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
#=GC SS_cons                                                  >>>->>>>,}}-}}}}}},,<<<<------<<<<____>>>>----->>>>,,,<<<<<<<---<-----<<<___........______>>>----->---->>>>>>--->,,<<<<<------<<<<<-----<<____>>------->>>>>>>>>>,}}}}}}}}}},,,,,,,,,,{{{-----{,[[[[-[-[
#=GC RF                                                       CugAcgcaGCgAcgCCGCGUGgggGAuGAAggccUUcGggccGUAAAcccCUuUccccgGgGAagAaaaaccgaua........uauuaucgguuUGAcgGUAcCcggggAagAAGcccCGGCUAAcuccGUGCCAGCAGCCGCGGUAAuACggagGgggCaaGCGuugccCGGAaUuAuUGGGcGUAAAGgGcgcGcAg

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GCGGTCTAGCAAGTCAGGTGTAAAAGACCACGGCTCAACCGTGGAGGTGCACCTGAAACTGCTAGGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAAGCGACTCCCTGGACTGACCCTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                  [[,<<<<<<<-<<<<<<<<<<<----<<<<<<<_____>>>>>>>-->>>>>>>>>-->>>>>>>>>,,,(((((((((--(((((((<<--<<<<<<<<---<<<______>>>------>>>>>>>>-->>,,,,<--<<____>>>)))))))-))))))-))),,,]]]]--]]]],,,,<<<<<<---<<---<<
#=GC RF                                                       GcGGcccggcAaGucgggcgcgAAAucccgcgGCUcAACcgcgggaucgcgcccgaaACugccgggCUuGaGuccggccGagGggggcggAAcucccgguGuAGcgGUGAAAugCGUAGAuaucgggagGAacaCCacugGCGAAGGCggccccCuGggccgguaCuGACgCugAggcgCGAAAGCguGGGgAgCaAAcg

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTCCCGTGCCGTAGGTAACCCATTAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCTAAGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************.5678*******************************************************************************************************************************************
#=GC SS_cons                                                  <<_________>>>>--->>>>>>>>,,,,,,,,,,((((((,,<<<<<<<<<<<<_____>>>>>>>>>>>>,,,<<____>>,,,,,))))))}}}},<<<------<<<<____>>>>---->>>,,,,,,,,{{{{{-{{{{{{{-{{,,{{{{{{{{{{{{{{{{{,,,,<<<<________>>>>,,,,,,,,{
#=GC RF                                                       GGAUUAGAUACCCcgGUAGuCCacGCcgUAAACGAUGggcgCUaGgcgccggggggauuaaccccccggcgcCgaAGcuAAcgCauUAAGcgccCCgCCUGgGGAgUACggcCGCAAGgcugAAACuCAAAGGAAUuGaCgGgGgCCCGCaCAAGCGguGgaGcauGuGGuUUAAuuCGAuGcaAcgCGaaGAACCUUAC

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CAGGGCTTGACATGCAGGTagTAGCGAGCCGAAAGGTGAGCGACCCTTtctt.atggGAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCATCGGGTAAAGCCGGGCACTCTAGAGGGACTGCCGTCGACAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP **************999998*9********************88888889**.999767777799999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CAGGGCTTGACATGCAGGTggTAGCGACCCGAAAGGGAAGCGACCCTAccggtaaggTAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCAGCGGGTGATGCCGGGCACTCTAGAGGGACTGCCGTCGATAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP **************999999**********************99999889**9999888999999999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CAGGGCTTGACATGCAGGTggTAGCGACCCGAAAGGGAAGCGACCCTAccggtaaggTAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCAGCGGGTGATGCCGGGCACTCTAGAGGGACTGCCGTCGATAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP **************999999**********************99999889**9999888999999999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CAGGGCTTGACATGCAGGTagTAGCGAGCCGAAAGGTGAGCGACCCTTtctt.atggGAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCATCGGGTAAAGCCGGGCACTCTAGAGGGACTGCCGTCGACAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP **************999998*9********************88888889**.999767777799999.***********************************************************************************************************************************
#=GC SS_cons                                                  {{{{{{,,,,,((((((((..,,<<<<<<<____>>>>>>>,<<<<__.........__>>>>)))))-))),[[-[[[[--[[[[[[[[[,,,((((((<<<____>>>,,<<<<______>>>>,,)))))),,,,,((((,<<<<<<<---<<--<<<______>>>>>---->>>>>>>,,<<<<<<<<_____>>
#=GC RF                                                       CcgggcUUGAcgugccggg..aaccccccgGAaAcgggggggccccuu.........aaggggcccggacacAGGUGcugCAuGgcuGuCGUCAGCuCGuguCGUGAGauGUcgGGUUAAGUCCcgcAaCGaGCGCAACCCccgcccccagUUgCcAucgguuaaugccggGaACUcuggggggACcgCCggcGauAAgc

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGCGATCCGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGTGATCTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGCGGGATGCGAAGCCGCGAGGTGGAGCGAATCCCTGAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGTGATCTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                  >>>>>>,,,,,)))),,,,]]]]-]]]---]]]]]]]],,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<<-----<<<--<<---<<<____>>>--->>---->>>----->>>>>>>,,,,,,<---<<<<<<<<________>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<_______>>>>>>>>
#=GC RF                                                       cGGagGAAGGuggGGAuGACGuCAaguCauCauggCCCUUAugcccgGGGCuaCACaCgugCuaCAAUGgccggcACAaaggGuaGCaAagccGcGAggcggAGCaAAUCccaaAAAgccggcCucAGUUCGGAcuGgaGgCUGcAAcUCGcCucCagGAAGuuGGAauCGCUAGUAaucGcggcUCAGcAugccgCggu

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *******************************************************************.***********6666..................................................................69*************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *******************************************************************.***********6666..................................................................69*************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGGGAGCCGGCAACACCCGAAGCCGGaCCTCCCAACC.----cggcactcaagtgggcatgttagaaaaggtaggaagaggaagaatgatgtgcccacttgagtgccg..GGAGGGAGCCGTCGAAGGTGGGGCTGGTGACTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *******************************************************************557*******9.....578***************************************************************..9************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *******************************************************************.***********6666..................................................................69*************************************************
#=GC SS_cons                                                  ,,,,,,}}---}}}}}}}}}}-}},,<-<<-<<---<<<<<<<<--<<<<<<<<<<<<----<<<<<.<-<<<<--<<.____~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~..>>->>>>>>>>>>--->>>>>>>>>>>>-->>>>>>>>---->>-->>-
#=GC RF                                                       GAAUACGuUCcCGGGcCuuGuACaCACCGcCCGUCAcgcCacggaAgccggccccgcCuGAAGccgc.cgcgccAAcc.uuaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~..ggaggcgggcggCuAaGgcggggccggcgAccggGgcgAAGUCGUAaCA

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ****************************************
#=GC SS_cons                                                  ->,<<<<<<<<<<____>>>>>>>>>>:::::::::::::
#=GC RF                                                       AGGuagCcguaccGGAAggugcgGcugGAUcACCUCCUUu
//

23S rRNA of Caldanaerobacter subterraneus subsp. tengcongensis MB4

All 23S rRNA sequences Sequence alignment file Structure alignment file

23S Matrix

Accession Identifier TTE_RS00250 TTE_RS00395 TTE_RS07275 TTE_RS10750
NC_003869 TTE_RS00250 100.0 99.933 96.174 97.391
NC_003869 TTE_RS00395 99.933 100.0 96.0 97.217
NC_003869 TTE_RS07275 96.174 96.0 100.0 98.677
NC_003869 TTE_RS10750 97.391 97.217 98.677 100.0 
# STOCKHOLM 1.0
#=GF AU Infernal 1.1.5

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCCaTAGGCACCTGGAGCCGAAGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCAGGCAGAGATCCGGGGATTTCCGAATGGGGGAACCCGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********99889********************779********************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCCaTAGGCACCTGGAGCCGAAGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCAGGCAGAGATCCGGGGATTTCCGAATGGGGGAAC-CGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********99889********************779*******************************************************************************************97.5*********************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         GGTCAAGTGAGgTAAGGGCGCATGGTGGATGCC.CAGGCACCTGGAGCCGATGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCGGGCGTTGATCCGGGGATCTCCGAATGGGGAAACCCGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********99889********************.**********************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCC.CAGGCACCTGGAGCCGATGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCGGGCAGAGATCCGGGGATTTCCGAATGGGGGAACCCGCTTGAGGTAATACTCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********99889********************.**********************************************************************************************************************************************************************
#=GC SS_cons                                                 {{{{{{{{,,,.,,,{{{{{{{{{{-----{{{.,,{{{{{{{{{{{[[,,,,,((((<<<________>>>,,,,,<<<<<<<--<<<_______>>>----->>>>>>>,,,)))),,,<<<____>>><<<<<<<______>>>>>>>,<<<<<<<<<_________>>>>>>>>>,]],,,<<<<<<-----<<__
#=GC RF                                                      ggucaagcuau.uAAggGCgcgcGGuGGAUgCC.UuGGcgccggggggCGAuGAcGGaCGcGguaagCugCGAuAAGCcccGgggAGccGcaaacAggCuuugAccCgggGAUuuCCgAAUgGGGaAACCcgcccggguuaauacccgggcAcccccggccgAAuauauAggccgggggaGcaaACccgGgGAAcUGaAA

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAGGGGAGAAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGAGAGGTGTGTG.AGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCAAAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **********************************************************************************998888..*********997.577799999885555555555.6799************9978*******************************************999887655555
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAGGGGAGAAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGAGAGGTGTGTG.AGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCAAAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **********************************************************************************998888..*********997.577799999885555555555.6799************9978*******************************************999887655555
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CATCTCAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCCGAGTAGTGGCGAGCGAAAGGGGAAGAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGCAAAAGTGTGCgAGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCATAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP **********************************************************************************998888..*********997.5888*******999999999944699************9978*******************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAGAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGCAAAAGTGTGCgAGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCATAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP **********************************************************************************998888..*********997.5888*******999999999944699************9978*******************************************************
#=GC SS_cons                                                 __>>------>>>>>->,,,,,,,,,<<____>>,,{<<<<<-----<<_____>>---->>>>>,,[[[[,,,,<<<<<<<________>>>>>>>,,,,,,(((-(((((-------(((((.((((((((-(((,,,<<<.<<______>>>>>,,<___>,<<<_______>>>,,,)))---)))))))))))))
#=GC RF                                                      CAuCUaAGUAcCcggAGGAAaAGAAAgcAAaagcGAuuCCccuAGUAGcGGCGAgCGAAaggGGaauaGcCcAAACcggggguauuuguucccccgGGGUuGugGGaccgccauauuaaccgcc.cccccgcuAgccgAAcgg.ccUGGAAaggccgaCcAuAgagGGUGAuAGuCCcGUAggcgAAagcgggggggcgg

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         CAGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGTCCGgcactcaacctag
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP 6799999999******************9998..99******************************************.*******************.**********************************.******************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         CAGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGTCCGgcactcaacctag
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP 6799999999******************9998..99******************************************.*******************.**********************************.******************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CTGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGCCTGg............
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ****************************9998..99******************************************.*******************.**********************************.*****************************************************7............
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         CTGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGCCTGg............
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ****************************9998..99******************************************.*******************.**********************************.*****************************************************7............
#=GC SS_cons                                                 --)))))---))),,,,,<<<<<<<<<_______>>>>>>>>>,,,,,,<<<<<______>>>>>,,]]]],,},,}}-}}}}}}}-}},,,,,,,,,,,,,,,<<____>>,,,,}},,,,,,,,,<<<<_____>>>>,,,,,,,,,,,,,}-----}}}}}}}}}},,,,,{,<<<<<<<<<<<.............
#=GC RF                                                      uuggcgguauCCcGAGUAcggCggggcACGuGaAgccccGccgGAAucugggggGACCAccccccAAGgCuAAaUAccacccggcgACCGAUAGuGaAcuAGUACCGUGAGGGAAAGGUGAAAAGaACCccggugAggGGAGUGAAAuAGaaCcUGAAACCgcgcGCccACAAgcaGucgcggcccc.............

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         tgtttactgggtgaatagagtaagagggatagaaagaggtagaagtagttaagagaagagtaagcactaagttGAGTGCCGGATGATGGCGTACTTTTTGCAGAACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGGAAGTTCGCTGCC
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **********************************************************************987666667***************************************************************76666667**************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         tgtttactgggtgaatagagtaagagggatagaaagaggtagaagtagttaagagaagagtaagcactaagttGAGTGCCGGATGATGGCGTACTTTTTGCAGAACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGGAAGTTCGCTGCC
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **********************************************************************987666667***************************************************************76666667**************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         ........................................................................gTAATACCAGGTGATGGCGTACTTTTTGCAGTACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGAAAGTTCGCTGCC
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ........................................................................6566667***************************************************************76666667**************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         ........................................................................gTAATACCAGGTGATGGCGTACTTTTTGCAGTACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGAAAGTTCGCTGCC
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ........................................................................6566667***************************************************************76666667**************************************************
#=GC SS_cons                                                 .........................................................................______>>>>>>>>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<..______>>>-->>>>,,,<<____>>,<<<<<_____>>>>>,,,,))))))))))
#=GC RF                                                      .........................................................................uuuaaaggggucgcggCGUcCcUuUUGuAuAAgGggcCggCGAgUuaccgcccgcggCaAGgcUAAgcc..uuaauaggcGgAgcCGuAGcGAAAgCGcGuccgAAuAgggCgauuAGucgcgggcg

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAGTAAGATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAGTAAGATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAATAAAATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP *******************************************************************************************************************************************************************************************************9
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAATAAAATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *******************************************************************************************************************************************************************************************************9
#=GC SS_cons                                                 ))),,[[-[---[[[[[[,,,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<-<<<<<________>>>>>>>>,,)-))))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<<--<<<<<<<<<<<----<<<-
#=GC RF                                                      guaGACcCGAAaCcggguGAuCuaccCauggcCAGGguGAAgcgcggcUAAagccgcguGGAGgcCCGAACcgacgcgcGUUGAAAAgcgcgcgGAUGAgcuguGgguaGGgGcGAAAggCcAAUCaAacccgGaGAUAGCUgGUUCUCccCGAAAugccuUuAGgggcaGCcucgggcauucccccccggcGGUAgaGC

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         gACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCTCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *******************98..4589*****************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         gACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCTCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *******************98..4589*****************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         cACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCCCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP 9******************98..4589*****************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         cACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCCCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP 9******************98..4589*****************************************************************************************************************************************************************************
#=GC SS_cons                                                 .--<<<-<<<<---<<<<<<<____>>>>>->>--->>>>->>>-->>->---->>>>>>>>>>-->>>>>>>>->,,,<<<<<<<<<<______>>>>>>>>>>,,,,<<<______>>>,,,((((-(((---(((------(-((((((-----------(((-((((((((((-------(((((,<<<--<<<__
#=GC RF                                                      .ACuggaugggcuagGgggccuaacggccuACcaAacccaaccaAACuccGAAUgccggggggguaagcccgggAGucAGaccgcggggGaUAAgcuccgcgguCgAgAGGGaAAcAgCCCAGAcCgcCggcUAAGGuCCCuAAgugcgggcUaAGUGgaaAAgGcuGuggggccgCuuAGACAaCcaGGAgGUUGGCUU

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGGAGCTGGACTGCGCAGTAGAGAGAATGCCGGCATGAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************99.***********************************9...6677..9*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGGAGCTGGACTGCGCAGTAGAGAGAATGCCGGCATGAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************99.***********************************9...6677..9*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGAGGCTGGACTGCGCAGTAGTGAGAATGCCGGCATGAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************************99.***********************************9...6677..9*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGAGGCTGGACTGCGCAGTAGTGAGAATGCCGGCATGAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******************************************************************99.***********************************9...6677..9*************************************************************************************
#=GC SS_cons                                                 _______>>>--.>>><___><---<<______>>->,)))))---)))))))))))))--------------------))))))))))---)))))))<<<<<<<<_____>>>>>>>>,,,,]]]]]]<-<<<<<<<<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,,,}}}}}}{{---
#=GC RF                                                      AGAAGCAGCCAU.CcUuuAAaGAguGCGUAAuAGCUCACugGuCgAGcggccccgCgCcGAaAAUguaaCGGGgcUcAAgcccgccaCCGAAgccgcGggcucgcgcuuuaagcgcgagcGGUAGggGAGCguuccgcccgcguuGAAgccgccccGuaAggggcggcGGAgcgggcggaaGuGAgaAUGccGgcacgAG

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         TAGCGA-GAGTAAGGTGAGAAACCTTACCGCCGGAAGCCTAAGGATTCCTGGGGAAGGGTCGTCCACCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTAGAGAATCCGGTACCACCGAGGGCCGCaTGAGGGAAGTGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******.89********************************************************************************************************************************************888999*********************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         TAGCGA-GAGTAAGGTGAGAAACCTTACCGCCGGAAGCCTAAGGATTCCTGGGGAAGGGTCGTCCACCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTAGAGAATCCGGTACCACCGAGGGCCGCaTGAGGGAAGTGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******.89********************************************************************************************************************************************888999*********************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         TAGCGA-GAGCAAGGTGAGAAACCTTGCCGCCGGAAGCCTAAGGTTTCCTGGGGAAGGGTAATCCGCCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTTGATATTCCGGTACCACCGAGGGCCGCtTGAGGGAAGCGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******.89********************************************************************************************************************************************987999*********************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         TAGCGA-GAGCAAGGTGAGAAACCTTGCCGCCGGAAGCCTAAGGTTTCCTGGGGAAGGGTAATCCGCCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTTGATATTCCGGTACCACCGAGGGCCGCtTGAGGGAAGCGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******.89********************************************************************************************************************************************987999*********************************************
#=GC SS_cons                                                 --{{,,,,,<<<<<<_______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[[,<<---<<<-<-<<<____>>>->->>>--->>,,,<<<<<________>>>>>,,(((((((((((--.---((--((((((---((((--(((--(((((.<<<<<<_________
#=GC RF                                                      UAgCGAuAAggcggGUGAgAAuCccgccCGCCGaAAgcCcAAGGuUUCCuggGuaAgGuuaaUCcgCccaGGGUuAGuCGggaCCUAAGgcGaggccGAaAggcGuAgcCGAUGGaaAgcgGGUuAAuAUUCCcgcaCcgcccggggccug.uaagcgacggggcGACgcagaaggcuaggcgc.gcgggcuauuGGauu

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.*************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.*************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         AGCGCGTCCAACCAGCCACCGaaGGGCACGTAGGCAAATCCGCGTGCTGGC-AGGGGGCTGGGAAGGGGAGCCGC----AAGGCGAAGCCGCCGAGGC--AGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********************9999***********************9887.78889***********9988866....6688899**********97..89******************8.8876.*************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.*************************************************************************
#=GC SS_cons                                                 _>>>>>><<--<<<<---<<<..-<<<<<<<-<<_____>>>>>>>>>---->>>--->>>>--->>,<<<<<<<____>>>>>>>,,)))))---)))---))))--------))))))--))---)))))))))))]]]],,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{----{{{{
#=GC RF                                                      ugcccgcccaagcgcguaggc..uggggggcAGguAAAucCgccccccaauagccgAggcgcgaugggccgcgccuuaaggcgcggaggcgccgaagccaugcugcCaAGAAAAgccccgaagcuaaggccccgggcgccCGUACCguAAACCGACACAGGUgGgcggGggGAguAccCcaAGGCGcucGgGagAAcccu

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *************************************************9.................8999.................9***************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *************************************************9.................8999.................9***************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CCTTAAGGAACTCGGCAAATTGACCCCGTAACTTCGGGAGAAGGGGTGCCTCCctcaggctTAGAGTTTATtGCTCTAggcttgaGAAGGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************9999998777777666677777777889999*******************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *************************************************9.................8999.................9***************************************************************************************************************
#=GC SS_cons                                                 {{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<........<<<<<<____.>>>>>>.......>>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<--<<<---<<-<<<
#=GC RF                                                      cgucAAGgAACUcGGCAAAaUagcccCGUAcCUUcGGgAgAAGgggcgCcccc........ccgggcguaa.gcccgg.......ggggGccGCAgagAAuaGGcccgggCGACUGuUUAucAAAAaCACAggccucugCuAagccGuAAggcgAuGUAuaggggcuGAcgCcUGCCCgGUgCcGGAAGGuUAAgggccg

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         GGGT----GTAG-----GCTCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ****....99**.....***************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         GGGT----GTAG-----GCTCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ****....99**.....***************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         GGGT----GAAA-----GCCCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ****....8888.....***************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         GGGT----GAAA-----GCCCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ****....8888.....***************************************************************************************************************************************************************************************
#=GC SS_cons                                                 <<<<--<<____>>--->>>>>>>->>--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,<---------<<<<<<_____>>>>>>>,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}}}}----}}},,,,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,
#=GC RF                                                      ggGuuAgcgcaAgcgAAgCcccggAccgAAgCCCCgGuaAACGGCGgCCGUAACUAUAACGGuCCUAAGGUAGCGAAAUUCCUUGuCGGgUAAGUuCCGaCCuGCACGAAugGcgUAACGAcccgggCaCUGuCUCgacgagggaCcCgGcGAAAguguAgUgccgGUGAAGAUGCcggcUACcCgCggcagGACgGAAA

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGACACTGGTAGTCTCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGAGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCTAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGACACTGCTAGTCTCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGAGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCTAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGGTCCTGGTAGTTCCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGCCGGTGGGATACCACCCTGGGACTACTGGGGTCCTAACCTATAGCCGTTATCCGGCGTAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGGTCCTGGTAGTTCCTGTACAGGATAGGTGGGAGACTGGGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGGGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCGAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                 ,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<<------<<<<<<<<____>>>>>>>>--->>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<-<<<<<<_____>>>>>>>>>,,,,,)))))))----)))),,<<<<_____>>>><<
#=GC RF                                                      GACCCCGUGgAcCUUUACUguAgccuggcauUGggccccggccccgcccGuguAGgAUAgGuGGGAGgCuuuGAAgccggggcgcuAgccccggcGGAGcCaucguUGAaAUACCaCcCgggcggggccggggccCUAACccacccccguaAuccgggggggGGACagugccagguGGGcAGUUUGaCuGGGGCgGuCgC

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGAAATCGCGCGTCGAGTGCAAGGGCAGAAGGGGGCTTGACTGTGAGACCGACGGGTCGAGCAGGGACGAAAGTCGGGCCTAGTGATCCGACGGTAGCGAGTGGGAGTGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                 <<<<___________>>>>>>{,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<<<<______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<<-<<________>>>>>>>>>,,,,,},,,,,,}}}}}--}}}}}},,,,,,,,<<<-<<
#=GC RF                                                      CUCCuAAAgaGUAACGGAGGcGcgCaAAGGucccCUcAgcccGguuGGaAAcCgggcguagAGcGcAAaggCAuAAGggggCUUgACuGcccGacugACAaguCgggCaGgggcGAAAgccGGccuUAGUGAUCCggcGGcuccgagUGGAAgggCCgucGCUcAACGGAUAAAAGgUACcCCGGGGAUAACAGGCugAu

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCCATCCCTAGTACGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCCATCCCTAGTACGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGAAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCTGCCCCTAGTACGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGTAGGAGACTTGAGGGGAGCCATCCCTAGTACGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                 <<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},,,,((((((((--((((,,<<<<<<<________
#=GC RF                                                      cccgcCCAAGaGUuCAuAuCGACGgcggggUUUgGCACCUCGAUGUCgGCUCguCgCAUCCUGGGgCuGgAGaAgGuCCCAAGGGUucGGCUGUUCGCCgaUUAAAGcGgcACGuGAGCuGGGUUcAGaaCGUCGUGAGACAGuuCGGUCCcUAUCcgccGcGgGCGuagGaggccUGAggGgauccgccccUAGUACGA

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *************************************************************************************************************************************.99997776.9********************************************************
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *************************************************************************************************************************************.99997776.9********************************************************
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         GAGGACCGGGGCGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTCGTATGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCTcGTAAGAGGGTAAGGCACCTCGAAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP *************************************************************************************************************************************999999*************************************************************
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAAGGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *************************************************************************************************************************************.99997776.9********************************************************
#=GC SS_cons                                                 _______>>>>>>><<<<<<---<<<----<<<<<<<<<<<____>>>>>>-->>>>>---->>>->>>>>>,,<<<----<<<<<___________>>>>>---->>>,))))------)))))))),,<<<._____>>>,(--((((<<<<<_______>>>>>,,,,<<<<<<<<<<<--<--<<<<<____>>>>
#=GC RF                                                      GAGGACCggggcgggcggaCCucugGUGuacCgGuuGucgcGCcAgcggCauagCcGgGUAGCcauGuccgcaacgGAUAAgCGCUGAAAGCAUcUAAGCGcGAAgCcgacCccAAGAUaAggccuCccucgg.uaaauccguuaAGgccccuggaAGAcuAccaggUuGAuaGgccggcgGUGcAAgcgcgGuAAcgcg

Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250         TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **************************8.999*********
Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395         TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **************************8.999*********
Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275         CTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ***************************.9***********
Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750         TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT
#=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP **************************8.999*********
#=GC SS_cons                                                 >>--->>>->>>>>->>>,,,))))-),,,}}}}}}}}::
#=GC RF                                                      cguAGCcgAccgguACuaAUuggcCgaaaggcuugaccuu
//

5S rRNA of Caldanaerobacter subterraneus subsp. tengcongensis MB4

All 5S rRNA sequences Sequence alignment file Structure alignment file

5S Matrix

Accession Identifier TTE_RS00255 TTE_RS00400 TTE_RS07270 TTE_RS10745
NC_003869 TTE_RS00255 100.0 100.0 97.248 100.0
NC_003869 TTE_RS00400 100.0 100.0 97.196 100.0
NC_003869 TTE_RS07270 97.248 97.196 100.0 97.248
NC_003869 TTE_RS10745 100.0 100.0 97.248 100.0 
# STOCKHOLM 1.0
#=GF AU Infernal 1.1.5

Caldanaerobacter_subterraneus_MB4_rna_09_TTE_RS00255         TCCGGTGGCGATAGCGGAGGGGAAACACCCGTTCCCATTCCGAACACGGAAGTTAAGCCCTCCAGCGCCGATG--GTACTGCA-----T--aa----GCGGGAGAGTAGGTCGCTGCCGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_09_TTE_RS00255 PP *************************************************************************..*****766.....3..34....345**********************
Caldanaerobacter_subterraneus_MB4_rna_14_TTE_RS00400         TCCGGTGGCGATAGCGGAGGGGAAACACCCGTTCCCATTCCGAACACGGAAGTTAAGCCCTCCAGCGCCGATG--GTACTGCA-----T--aa----GCGGGAGAGTAGGTCGCTGCCGGGG
#=GR Caldanaerobacter_subterraneus_MB4_rna_14_TTE_RS00400 PP *************************************************************************..*****766.....3..34....345**********************
Caldanaerobacter_subterraneus_MB4_rna_36_TTE_RS07270         TCCGGTGGCGATAGGGGAGGGGAAACACCCGTTCCCATTCCGAACACGGAAGTTAAGCCCTCCAGCGCCGATG--GTACT-----GCGTAA..GC----GGGAGAGTAGGACGCTGCCGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_36_TTE_RS07270 PP *************************************************************************..*****.....555566..55....59*********************
Caldanaerobacter_subterraneus_MB4_rna_63_TTE_RS10745         TCCGGTGGCGATAGCGGAGGGGAAACACCCGTTCCCATTCCGAACACGGAAGTTAAGCCCTCCAGCGCCGATG--GTACTGCA-----T--aa----GCGGGAGAGTAGGTCGCTGCCGGAA
#=GR Caldanaerobacter_subterraneus_MB4_rna_63_TTE_RS10745 PP *************************************************************************..*****766.....3..34....345**********************
#=GC SS_cons                                                 (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>>>>-->><<<-<<----<-<<-----<<____~~>>----->>->->>->>>,))))))))):
#=GC RF                                                      ccuggcggcCAUAgcggggcggAaacACccGauCCCAUCCCGaACuCggAAguUAAGcgcccuagcgccgggguAGuAcuggGgUGgGuGA~~cCaCcUGggAaaccagguCgccgccaggc
//