# STOCKHOLM 1.0
#=GF AU Infernal 1.1.5

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         TAATTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcctcgtgtcTTGGCAGGTTTAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTTGAGACCGGGATAACCCTGGGAAACTGGGGCTAATACCGGATACGCTCCCTCtAGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *********************************************************************9977777763...445555555567777779999*******************************************************************************************9999**
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         TAGCTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGGCCTGTCAAG---gcgttatgttTTGGCAGGTTAAGCGGCGGACGGGTGAGTAACGCGTGAGCAACCTACCCTTGAGACAGGGATAACCCTGGGAAACCGGGGCTAATACCTGATATACTCTATT.AGGGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP **********************************************************************999988884...445555555588889999**********************************************************************************************.*****
#=GC SS_cons                                                  ::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{----{{{-{{{,,<<<--<<<<<-<<<<<<<____~~~~~~~~~~>>>>>>>->>->>>>>>,,,,,,[[[,,,,,,((((((((--((---(((((((,<<<<----<<<<<<<____>>>>>>>----->>>>,,,,,<<<<<<<.<<<__
#=GC RF                                                       uuuauggAGaGuuUGAUCcUggCuCAGggcGaaCGCuGGCGGcgcGcuUaAcaCAuGCAAGuCGAgccccacggggccuuaa~~~~~~~~~~ggccccgagguggcGgCGaAcGGGuGAGUAAcgCGcgggcAAccUacCcccgggugcgggAUAccccccgGAAAcggggggUAAUAccgcAUaaugccccgg.gccgu

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         ATCCTgGAGGGAGGAAA.GGTagcgcAAGCTGCCGCTCAAGGATGGGCCCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTGGGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP **9999***********.****998666666*************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         ATCCT.GATGGAGGAAAgGGC.....GGGAAGCCGCTCAAGGATGGGCTCGCGTCCCATCAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCTACGACGGGTAGCCGGCCTGAGAGGGTGGTCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *****.*******88885789.....999***************************************************************************************************************************************************************************
#=GC SS_cons                                                  __>>>.>>>>>>>,,,,.<<<....._____>>>,)))))))--))))))))))<<<--<-<<<--<<<<<<<<_______>>>>>>>>>>>----->>>>,,<<<<<<<<____>>>>--->>>>]]],<<<<<<__________>>>>>>,<<<<____>>>>,,,}}}}}}-},,,,,<-<<<---<<<<<____>>
#=GC RF                                                       auggc.ccggggcuAAA.Ggc.....auuuagcCGcccgggGAugggcccgCGccccAUcAGcuaGuuGGuggGGUAAuGGCccaCCaaggCgAuGAggggUAGccGgccuGAGAgggcGauCggCCaCAcuGGgaCUGAGAcACGgcCCagACuCCUACGGGaGGCAGCaGugggGAAUauUgcgCAAugGgcGaAAgc

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CTGACGGAGCGACGCCGCGTGAGCGAAGAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CTGACGGAGCGACGCCGCGTGAGCGAATAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CTGACCCAGCGACGCCGCGTGGGGGATGAAGGCCTGCGGGTCGTAAACCCCTGTCGGAAGGGACGATGCTCTAAGGggtgaacaGCCTCTTAGAGTGACGGTACCTTCCAAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTCACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *************************************************************************99999999876666666**************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CTGACGGAGCGACGCCGCGTGAGCGAAGAAGGCCTTCGGGTCGTAAAGCTCGATAGTGTGGGAAGAAGGG------........-----A-----TGACGGTACCACACGA--AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGGGCGAGCGTTGTCCGGAGTTACTGGGCGTAAAGGGCGCGTAG
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *******************************************************************998...................6.....9*************96..99*************************************************************************************
#=GC SS_cons                                                  >>>->>>>,}}-}}}}}},,<<<<------<<<<____>>>>----->>>>,,,<<<<<<<---<-----<<<___........______>>>----->---->>>>>>--->,,<<<<<------<<<<<-----<<____>>------->>>>>>>>>>,}}}}}}}}}},,,,,,,,,,{{{-----{,[[[[-[-[
#=GC RF                                                       CugAcgcaGCgAcgCCGCGUGgggGAuGAAggccUUcGggccGUAAAcccCUuUccccgGgGAagAaaaaccgaua........uauuaucgguuUGAcgGUAcCcggggAagAAGcccCGGCUAAcuccGUGCCAGCAGCCGCGGUAAuACggagGgggCaaGCGuugccCGGAaUuAuUGGGcGUAAAGgGcgcGcAg

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GCGGTCTAGCAAGTCAGGTGTAAAAGACCACGGCTCAACCGTGGAGGTGCACCTGAAACTGCTAGGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAAGCGACTCCCTGGACTGACCCTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GCGGTTTAGCAAGTCAGGTGTAAAAGGCCACGGCTCAACCGTGGATATGCATCTGAAACTGCTGAGCTAGAGGGCAGGAGAGGGGAGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGAATACCAGTGGCGAAGGCGACTCCCTGGACTGGCCCTGACGCTGAGGCGCGAGAGCGTGGGGAGCAAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                  [[,<<<<<<<-<<<<<<<<<<<----<<<<<<<_____>>>>>>>-->>>>>>>>>-->>>>>>>>>,,,(((((((((--(((((((<<--<<<<<<<<---<<<______>>>------>>>>>>>>-->>,,,,<--<<____>>>)))))))-))))))-))),,,]]]]--]]]],,,,<<<<<<---<<---<<
#=GC RF                                                       GcGGcccggcAaGucgggcgcgAAAucccgcgGCUcAACcgcgggaucgcgcccgaaACugccgggCUuGaGuccggccGagGggggcggAAcucccgguGuAGcgGUGAAAugCGUAGAuaucgggagGAacaCCacugGCGAAGGCggccccCuGggccgguaCuGACgCugAggcgCGAAAGCguGGGgAgCaAAcg

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTCCCGTGCCGTAGGTAACCCATTAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCTAAGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************.5678*******************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGGGTGCTAGGTGTGGGGAGC-GGAAGCTTTCCGTGCCGTAGGAAACCCAATAAGCACCCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************.5678*******************************************************************************************************************************************
#=GC SS_cons                                                  <<_________>>>>--->>>>>>>>,,,,,,,,,,((((((,,<<<<<<<<<<<<_____>>>>>>>>>>>>,,,<<____>>,,,,,))))))}}}},<<<------<<<<____>>>>---->>>,,,,,,,,{{{{{-{{{{{{{-{{,,{{{{{{{{{{{{{{{{{,,,,<<<<________>>>>,,,,,,,,{
#=GC RF                                                       GGAUUAGAUACCCcgGUAGuCCacGCcgUAAACGAUGggcgCUaGgcgccggggggauuaaccccccggcgcCgaAGcuAAcgCauUAAGcgccCCgCCUGgGGAgUACggcCGCAAGgcugAAACuCAAAGGAAUuGaCgGgGgCCCGCaCAAGCGguGgaGcauGuGGuUUAAuuCGAuGcaAcgCGaaGAACCUUAC

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CAGGGCTTGACATGCAGGTagTAGCGAGCCGAAAGGTGAGCGACCCTTtctt.atggGAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCATCGGGTAAAGCCGGGCACTCTAGAGGGACTGCCGTCGACAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP **************999998*9********************88888889**.999767777799999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CAGGGCTTGACATGCAGGTggTAGCGACCCGAAAGGGAAGCGACCCTAccggtaaggTAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCAGCGGGTGATGCCGGGCACTCTAGAGGGACTGCCGTCGATAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP **************999999**********************99999889**9999888999999999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CAGGGCTTGACATGCAGGTggTAGCGACCCGAAAGGGAAGCGACCCTAccggtaaggTAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCAGCGGGTGATGCCGGGCACTCTAGAGGGACTGCCGTCGATAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP **************999999**********************99999889**9999888999999999.***********************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CAGGGCTTGACATGCAGGTagTAGCGAGCCGAAAGGTGAGCGACCCTTtctt.atggGAGGGAGCCTG-CACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCTCTAGTTGCCATCGGGTAAAGCCGGGCACTCTAGAGGGACTGCCGTCGACAAGA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP **************999998*9********************88888889**.999767777799999.***********************************************************************************************************************************
#=GC SS_cons                                                  {{{{{{,,,,,((((((((..,,<<<<<<<____>>>>>>>,<<<<__.........__>>>>)))))-))),[[-[[[[--[[[[[[[[[,,,((((((<<<____>>>,,<<<<______>>>>,,)))))),,,,,((((,<<<<<<<---<<--<<<______>>>>>---->>>>>>>,,<<<<<<<<_____>>
#=GC RF                                                       CcgggcUUGAcgugccggg..aaccccccgGAaAcgggggggccccuu.........aaggggcccggacacAGGUGcugCAuGgcuGuCGUCAGCuCGuguCGUGAGauGUcgGGUUAAGUCCcgcAaCGaGCGCAACCCccgcccccagUUgCcAucgguuaaugccggGaACUcuggggggACcgCCggcGauAAgc

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGCGATCCGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGTGATCTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGCGGGATGCGAAGCCGCGAGGTGGAGCGAATCCCTGAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ********************************************************************************************************************************************************************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         CGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCTATATGCCCTGGGCCACACACGTGCTACAATGGCCGGTACAGAGGGAAGCGAAGGAGTGATCTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ********************************************************************************************************************************************************************************************************
#=GC SS_cons                                                  >>>>>>,,,,,)))),,,,]]]]-]]]---]]]]]]]],,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<<-----<<<--<<---<<<____>>>--->>---->>>----->>>>>>>,,,,,,<---<<<<<<<<________>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<_______>>>>>>>>
#=GC RF                                                       cGGagGAAGGuggGGAuGACGuCAaguCauCauggCCCUUAugcccgGGGCuaCACaCgugCuaCAAUGgccggcACAaaggGuaGCaAagccGcGAggcggAGCaAAUCccaaAAAgccggcCucAGUUCGGAcuGgaGgCUGcAAcUCGcCucCagGAAGuuGGAauCGCUAGUAaucGcggcUCAGcAugccgCggu

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP *******************************************************************.***********6666..................................................................69*************************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP *******************************************************************.***********6666..................................................................69*************************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         GAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGGGAGCCGGCAACACCCGAAGCCGGaCCTCCCAACC.----cggcactcaagtgggcatgttagaaaaggtaggaagaggaagaatgatgtgcccacttgagtgccg..GGAGGGAGCCGTCGAAGGTGGGGCTGGTGACTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP *******************************************************************557*******9.....578***************************************************************..9************************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         GAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTCTGCAACACCCGAAGCCGG.TGGCCCAACCcGAAG..................................................................agGGAGGGAGCCGTCGAAGGTGGGGCAGATGATTGGGGTGAAGTCGTAACA
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP *******************************************************************.***********6666..................................................................69*************************************************
#=GC SS_cons                                                  ,,,,,,}}---}}}}}}}}}}-}},,<-<<-<<---<<<<<<<<--<<<<<<<<<<<<----<<<<<.<-<<<<--<<.____~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~..>>->>>>>>>>>>--->>>>>>>>>>>>-->>>>>>>>---->>-->>-
#=GC RF                                                       GAAUACGuUCcCGGGcCuuGuACaCACCGcCCGUCAcgcCacggaAgccggccccgcCuGAAGccgc.cgcgccAAcc.uuaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~..ggaggcgggcggCuAaGgcggggccggcgAccggGgcgAAGUCGUAaCA

Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_07__TTE_RS00245 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_12__TTE_RS00390 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_38__TTE_RS07280 PP ****************************************
Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765         AGGTAGCCGTACGGGAACGTGCGGCTGGATCACCTCCTTT
#=GR Caldanaerobacter_subterraneus_MB4_rna_67__TTE_RS10765 PP ****************************************
#=GC SS_cons                                                  ->,<<<<<<<<<<____>>>>>>>>>>:::::::::::::
#=GC RF                                                       AGGuagCcguaccGGAAggugcgGcugGAUcACCUCCUUu
//