# STOCKHOLM 1.0 #=GF AU Infernal 1.1.5 Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCCaTAGGCACCTGGAGCCGAAGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCAGGCAGAGATCCGGGGATTTCCGAATGGGGGAACCCGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********99889********************779******************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCCaTAGGCACCTGGAGCCGAAGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCAGGCAGAGATCCGGGGATTTCCGAATGGGGGAAC-CGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********99889********************779*******************************************************************************************97.5********************************************************************* Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 GGTCAAGTGAGgTAAGGGCGCATGGTGGATGCC.CAGGCACCTGGAGCCGATGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCGGGCGTTGATCCGGGGATCTCCGAATGGGGAAACCCGCTTGGGGTAATACCCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********99889********************.********************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 GGTCAAGAGAGgTAAGGGCGCATGGTGGATGCC.CAGGCACCTGGAGCCGATGAAGGACGCGGCAAGCGGCGAAACGCCCCGGGGAGCCGCAAGCGGGCAGAGATCCGGGGATTTCCGAATGGGGGAACCCGCTTGAGGTAATACTCAAGCATCCGCTGATGAATCCATAGTCAGCGGAGGGGAACCGGGCGAACTGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********99889********************.********************************************************************************************************************************************************************** #=GC SS_cons {{{{{{{{,,,.,,,{{{{{{{{{{-----{{{.,,{{{{{{{{{{{[[,,,,,((((<<<________>>>,,,,,<<<<<<<--<<<_______>>>----->>>>>>>,,,)))),,,<<<____>>><<<<<<<______>>>>>>>,<<<<<<<<<_________>>>>>>>>>,]],,,<<<<<<-----<<__ #=GC RF ggucaagcuau.uAAggGCgcgcGGuGGAUgCC.UuGGcgccggggggCGAuGAcGGaCGcGguaagCugCGAuAAGCcccGgggAGccGcaaacAggCuuugAccCgggGAUuuCCgAAUgGGGaAACCcgcccggguuaauacccgggcAcccccggccgAAuauauAggccgggggaGcaaACccgGgGAAcUGaAA Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAGGGGAGAAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGAGAGGTGTGTG.AGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCAAAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **********************************************************************************998888..*********997.577799999885555555555.6799************9978*******************************************999887655555 Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAGGGGAGAAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGAGAGGTGTGTG.AGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCAAAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **********************************************************************************998888..*********997.577799999885555555555.6799************9978*******************************************999887655555 Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CATCTCAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCCGAGTAGTGGCGAGCGAAAGGGGAAGAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGCAAAAGTGTGCgAGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCATAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP **********************************************************************************998888..*********997.5888*******999999999944699************9978******************************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 CATCTAAGTAGCCCGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAGAGCCCAAACCTACCGCTTAGG--CGGTAGGGGTTC-GGGCCCACCGCAAAAGTGTGCgAGTACTCTAGGCGAACGGaCCTGGAAAGGCCGGCCATAGAGGGTGAAAGCCCCGTAGCCGAAAGGGGAAAGCGCA #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP **********************************************************************************998888..*********997.5888*******999999999944699************9978******************************************************* #=GC SS_cons __>>------>>>>>->,,,,,,,,,<<____>>,,{<<<<<-----<<_____>>---->>>>>,,[[[[,,,,<<<<<<<________>>>>>>>,,,,,,(((-(((((-------(((((.((((((((-(((,,,<<<.<<______>>>>>,,<___>,<<<_______>>>,,,)))---))))))))))))) #=GC RF CAuCUaAGUAcCcggAGGAAaAGAAAgcAAaagcGAuuCCccuAGUAGcGGCGAgCGAAaggGGaauaGcCcAAACcggggguauuuguucccccgGGGUuGugGGaccgccauauuaaccgcc.cccccgcuAgccgAAcgg.ccUGGAAaggccgaCcAuAgagGGUGAuAGuCCcGUAggcgAAagcgggggggcgg Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 CAGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGTCCGgcactcaacctag #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP 6799999999******************9998..99******************************************.*******************.**********************************.****************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 CAGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGTCCGgcactcaacctag #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP 6799999999******************9998..99******************************************.*******************.**********************************.****************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CTGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGCCTGg............ #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ****************************9998..99******************************************.*******************.**********************************.*****************************************************7............ Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 CTGGTGGGTACCAGAGTACCACGGGATAGGCG--ACCCTGTGGGAAGGAGGGAGGACCACCTCCTAAGGCTAAATACT-CCAGGTGACCGATAGCGCA-TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGG-GAGGGGAGTGAAATAGAACCTGAAACCATGTGCCCACAAGCAGTCAGAGCCTGg............ #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ****************************9998..99******************************************.*******************.**********************************.*****************************************************7............ #=GC SS_cons --)))))---))),,,,,<<<<<<<<<_______>>>>>>>>>,,,,,,<<<<<______>>>>>,,]]]],,},,}}-}}}}}}}-}},,,,,,,,,,,,,,,<<____>>,,,,}},,,,,,,,,<<<<_____>>>>,,,,,,,,,,,,,}-----}}}}}}}}}},,,,,{,<<<<<<<<<<<............. #=GC RF uuggcgguauCCcGAGUAcggCggggcACGuGaAgccccGccgGAAucugggggGACCAccccccAAGgCuAAaUAccacccggcgACCGAUAGuGaAcuAGUACCGUGAGGGAAAGGUGAAAAGaACCccggugAggGGAGUGAAAuAGaaCcUGAAACCgcgcGCccACAAgcaGucgcggcccc............. Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 tgtttactgggtgaatagagtaagagggatagaaagaggtagaagtagttaagagaagagtaagcactaagttGAGTGCCGGATGATGGCGTACTTTTTGCAGAACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGGAAGTTCGCTGCC #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **********************************************************************987666667***************************************************************76666667************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 tgtttactgggtgaatagagtaagagggatagaaagaggtagaagtagttaagagaagagtaagcactaagttGAGTGCCGGATGATGGCGTACTTTTTGCAGAACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGGAAGTTCGCTGCC #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **********************************************************************987666667***************************************************************76666667************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 ........................................................................gTAATACCAGGTGATGGCGTACTTTTTGCAGTACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGAAAGTTCGCTGCC #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ........................................................................6566667***************************************************************76666667************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 ........................................................................gTAATACCAGGTGATGGCGTACTTTTTGCAGTACGGGCCGGCGAGTTATGGTAGCGAGCGAGGTTAAGGGtaGAGATACCCGGAGCCGAAGCGAAAGCGAGTCCGAAGAGGGCGGAAAGTTCGCTGCC #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ........................................................................6566667***************************************************************76666667************************************************** #=GC SS_cons .........................................................................______>>>>>>>>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<..______>>>-->>>>,,,<<____>>,<<<<<_____>>>>>,,,,)))))))))) #=GC RF .........................................................................uuuaaaggggucgcggCGUcCcUuUUGuAuAAgGggcCggCGAgUuaccgcccgcggCaAGgcUAAgcc..uuaauaggcGgAgcCGuAGcGAAAgCGcGuccgAAuAgggCgauuAGucgcgggcg Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAGTAAGATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAGTAAGATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAATAAAATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP *******************************************************************************************************************************************************************************************************9 Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 ATAGACCCGAAACCGTGCGACCTACCCATGGCCAGGGTGAAGCCGGAATAAAATCTGGTGGAGGCCCGAACCCGTTGGCCGTGAAAAGCCATGGGATGAGCTGTGGGTAGCGGTGAAATGCCAATCGAGCACGGAGATAGCTGGTTCTCCCCGAAATAGCTTTAGGGCTAGCCTCAGGGTAAAGCCTGTGGAGGTAGAGC #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *******************************************************************************************************************************************************************************************************9 #=GC SS_cons ))),,[[-[---[[[[[[,,,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<-<<<<<________>>>>>>>>,,)-))))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<<--<<<<<<<<<<<----<<<- #=GC RF guaGACcCGAAaCcggguGAuCuaccCauggcCAGGguGAAgcgcggcUAAagccgcguGGAGgcCCGAACcgacgcgcGUUGAAAAgcgcgcgGAUGAgcuguGgguaGGgGcGAAAggCcAAUCaAacccgGaGAUAGCUgGUUCUCccCGAAAugccuUuAGgggcaGCcucgggcauucccccccggcGGUAgaGC Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 gACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCTCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *******************98..4589***************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 gACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCTCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *******************98..4589***************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 cACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCCCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP 9******************98..4589***************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 cACTGACTGGGCTAGGGGCCG--AGAGGCTACCGAACCCTATCAAACTCCGAATGCCACAGGCAAGTACCTGGGAGTCAGACCACGAGTGATAAGATCCGTGGTCGAGAGGGGAACAGCCCAGACCCCCAGCTAAGGTCCCGAAGGGCATGTTAAGTGGGAAAGGAAGTGGGACTTCGAAGACAACCGGGATGTTGGCTT #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP 9******************98..4589***************************************************************************************************************************************************************************** #=GC SS_cons .--<<<-<<<<---<<<<<<<____>>>>>->>--->>>>->>>-->>->---->>>>>>>>>>-->>>>>>>>->,,,<<<<<<<<<<______>>>>>>>>>>,,,,<<<______>>>,,,((((-(((---(((------(-((((((-----------(((-((((((((((-------(((((,<<<--<<<__ #=GC RF .ACuggaugggcuagGgggccuaacggccuACcaAacccaaccaAACuccGAAUgccggggggguaagcccgggAGucAGaccgcggggGaUAAgcuccgcgguCgAgAGGGaAAcAgCCCAGAcCgcCggcUAAGGuCCCuAAgugcgggcUaAGUGgaaAAgGcuGuggggccgCuuAGACAaCcaGGAgGUUGGCUU Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGGAGCTGGACTGCGCAGTAGAGAGAATGCCGGCATGAG #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************99.***********************************9...6677..9************************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGGAGCTGGACTGCGCAGTAGAGAGAATGCCGGCATGAG #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************99.***********************************9...6677..9************************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGAGGCTGGACTGCGCAGTAGTGAGAATGCCGGCATGAG #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************************99.***********************************9...6677..9************************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 AGAAGCAGCCATaCATTTAAAGAGTGCGTAACAGCTCACCGGTCGAGAGGTCCTGCGCCGAAAATGAA-CGGGGCTCAAACATGCCACCGAAGCTGGGGCTGCGC---GTAA--GCGCGGGGTAGGGGAGCGTACTGCGCGGGCAGAAGGCTGAGCGTAAGCGAGGCTGGACTGCGCAGTAGTGAGAATGCCGGCATGAG #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******************************************************************99.***********************************9...6677..9************************************************************************************* #=GC SS_cons _______>>>--.>>><___><---<<______>>->,)))))---)))))))))))))--------------------))))))))))---)))))))<<<<<<<<_____>>>>>>>>,,,,]]]]]]<-<<<<<<<<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,,,}}}}}}{{--- #=GC RF AGAAGCAGCCAU.CcUuuAAaGAguGCGUAAuAGCUCACugGuCgAGcggccccgCgCcGAaAAUguaaCGGGgcUcAAgcccgccaCCGAAgccgcGggcucgcgcuuuaagcgcgagcGGUAGggGAGCguuccgcccgcguuGAAgccgccccGuaAggggcggcGGAgcgggcggaaGuGAgaAUGccGgcacgAG Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 TAGCGA-GAGTAAGGTGAGAAACCTTACCGCCGGAAGCCTAAGGATTCCTGGGGAAGGGTCGTCCACCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTAGAGAATCCGGTACCACCGAGGGCCGCaTGAGGGAAGTGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******.89********************************************************************************************************************************************888999********************************************* Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 TAGCGA-GAGTAAGGTGAGAAACCTTACCGCCGGAAGCCTAAGGATTCCTGGGGAAGGGTCGTCCACCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTAGAGAATCCGGTACCACCGAGGGCCGCaTGAGGGAAGTGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******.89********************************************************************************************************************************************888999********************************************* Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 TAGCGA-GAGCAAGGTGAGAAACCTTGCCGCCGGAAGCCTAAGGTTTCCTGGGGAAGGGTAATCCGCCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTTGATATTCCGGTACCACCGAGGGCCGCtTGAGGGAAGCGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******.89********************************************************************************************************************************************987999********************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 TAGCGA-GAGCAAGGTGAGAAACCTTGCCGCCGGAAGCCTAAGGTTTCCTGGGGAAGGGTAATCCGCCCAGGGTAAGTCGGGGCCTAAGCCGAGGCCGGAAGGCGTAGGCGATGGGAAACCGGTTGATATTCCGGTACCACCGAGGGCCGCtTGAGGGAAGCGGGGACGCAGCGAGGTAGGCGGaGCGCGCGGTTGGTAG #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******.89********************************************************************************************************************************************987999********************************************* #=GC SS_cons --{{,,,,,<<<<<<_______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[[,<<---<<<-<-<<<____>>>->->>>--->>,,,<<<<<________>>>>>,,(((((((((((--.---((--((((((---((((--(((--(((((.<<<<<<_________ #=GC RF UAgCGAuAAggcggGUGAgAAuCccgccCGCCGaAAgcCcAAGGuUUCCuggGuaAgGuuaaUCcgCccaGGGUuAGuCGggaCCUAAGgcGaggccGAaAggcGuAgcCGAUGGaaAgcgGGUuAAuAUUCCcgcaCcgcccggggccug.uaagcgacggggcGACgcagaaggcuaggcgc.gcgggcuauuGGauu Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 AGCGCGTCCAACCAGCCACCGaaGGGCACGTAGGCAAATCCGCGTGCTGGC-AGGGGGCTGGGAAGGGGAGCCGC----AAGGCGAAGCCGCCGAGGC--AGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ********************9999***********************9887.78889***********9988866....6688899**********97..89******************8.8876.************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 AGCGCGTCCAACCAGACACCGgaGGGCACGTAGGCAAATCCGCGTGCCGGC-AGGGGGCTGGGAAGGGGAGCCGG----AAGGCGAAGCCGCTAAGA--ACGCTGCCAAGAAAAGCCGCTA-CCGA-GGCCTGAGGTGCCCGTACCGCAAACCGACACAGGTAGGCGAGGAGAGAATCCACAGGCGAGCGGGAGAACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ********************9**9************************987.78889***********9998865....6788999**********8..9********************8.8876.************************************************************************* #=GC SS_cons _>>>>>><<--<<<<---<<<..-<<<<<<<-<<_____>>>>>>>>>---->>>--->>>>--->>,<<<<<<<____>>>>>>>,,)))))---)))---))))--------))))))--))---)))))))))))]]]],,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{----{{{{ #=GC RF ugcccgcccaagcgcguaggc..uggggggcAGguAAAucCgccccccaauagccgAggcgcgaugggccgcgccuuaaggcgcggaggcgccgaagccaugcugcCaAGAAAAgccccgaagcuaaggccccgggcgccCGUACCguAAACCGACACAGGUgGgcggGggGAguAccCcaAGGCGcucGgGagAAcccu Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *************************************************9.................8999.................9*************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *************************************************9.................8999.................9*************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CCTTAAGGAACTCGGCAAATTGACCCCGTAACTTCGGGAGAAGGGGTGCCTCCctcaggctTAGAGTTTATtGCTCTAggcttgaGAAGGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************9999998777777666677777777889999******************************************************************************************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 CCTTAAGGAACTCGGCAAAATGACTCCGTAACTTCGGGAGAAGGAGTGCC---........------GAAA.------.......---GGCCGCAGAGAAGAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCTGCTAAGCCGAAAGGCGAAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAA #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *************************************************9.................8999.................9*************************************************************************************************************** #=GC SS_cons {{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<........<<<<<<____.>>>>>>.......>>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<--<<<---<<-<<< #=GC RF cgucAAGgAACUcGGCAAAaUagcccCGUAcCUUcGGgAgAAGgggcgCcccc........ccgggcguaa.gcccgg.......ggggGccGCAgagAAuaGGcccgggCGACUGuUUAucAAAAaCACAggccucugCuAagccGuAAggcgAuGUAuaggggcuGAcgCcUGCCCgGUgCcGGAAGGuUAAgggccg Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 GGGT----GTAG-----GCTCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ****....99**.....*************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 GGGT----GTAG-----GCTCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ****....99**.....*************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 GGGT----GAAA-----GCCCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ****....8888.....*************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 GGGT----GAAA-----GCCCTGAACCGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGCGTAACGACTTGGGCGCTGTCTCGAGGAGGGGCCCGGCGAAGTTGTAGTGCTCGTGAAGATGCGAGCTACCCGCGATTGGACGGAAA #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ****....8888.....*************************************************************************************************************************************************************************************** #=GC SS_cons <<<<--<<____>>--->>>>>>>->>--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,<---------<<<<<<_____>>>>>>>,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}}}}----}}},,,,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,, #=GC RF ggGuuAgcgcaAgcgAAgCcccggAccgAAgCCCCgGuaAACGGCGgCCGUAACUAUAACGGuCCUAAGGUAGCGAAAUUCCUUGuCGGgUAAGUuCCGaCCuGCACGAAugGcgUAACGAcccgggCaCUGuCUCgacgagggaCcCgGcGAAAguguAgUgccgGUGAAGAUGCcggcUACcCgCggcagGACgGAAA Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGACACTGGTAGTCTCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGAGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCTAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGACACTGCTAGTCTCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGAGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCTAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGGTCCTGGTAGTTCCTGTACAGGATAGGTGGGAGACTGAGAAGGTGGCGCGCCAGCGTCACTGGAGTCGCCGGTGGGATACCACCCTGGGACTACTGGGGTCCTAACCTATAGCCGTTATCCGGCGTAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 GACCCCGTGGAGCTTTACTGTAGCCTGTCACTGGGTCCTGGTAGTTCCTGTACAGGATAGGTGGGAGACTGGGAAGGTGGCGCGCCAGCGTCACTGGAGTCGGCGTTGGGATACCACCCTGGGACTAGTGGGGTTCTAACCTTAAGCCGTGAACCGGCGAAGGGACAATGGCAGGTGGGCAGTTTGACTGGGGCGGTCGC #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******************************************************************************************************************************************************************************************************** #=GC SS_cons ,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<<------<<<<<<<<____>>>>>>>>--->>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<-<<<<<<_____>>>>>>>>>,,,,,)))))))----)))),,<<<<_____>>>><< #=GC RF GACCCCGUGgAcCUUUACUguAgccuggcauUGggccccggccccgcccGuguAGgAUAgGuGGGAGgCuuuGAAgccggggcgcuAgccccggcGGAGcCaucguUGAaAUACCaCcCgggcggggccggggccCUAACccacccccguaAuccgggggggGGACagugccagguGGGcAGUUUGaCuGGGGCgGuCgC Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGAAATCGCGCGTCGAGTGCAAGGGCAGAAGGGGGCTTGACTGTGAGACCGACGGGTCGAGCAGGGACGAAAGTCGGGCCTAGTGATCCGACGGTAGCGAGTGGGAGTGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 CTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCGCGGACGGGAATCGCGCGAAGAGTGCAAAGGCAGAAGGGGGCTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGCGGCAGTGAGTGGGAACGCCGTCGCTCAACGGATAAAAGCTACCCCGGGGATAACAGGCTGAT #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******************************************************************************************************************************************************************************************************** #=GC SS_cons <<<<___________>>>>>>{,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<<<<______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<<-<<________>>>>>>>>>,,,,,},,,,,,}}}}}--}}}}}},,,,,,,,<<<-<< #=GC RF CUCCuAAAgaGUAACGGAGGcGcgCaAAGGucccCUcAgcccGguuGGaAAcCgggcguagAGcGcAAaggCAuAAGggggCUUgACuGcccGacugACAaguCgggCaGgggcGAAAgccGGccuUAGUGAUCCggcGGcuccgagUGGAAgggCCgucGCUcAACGGAUAAAAGgUACcCCGGGGAUAACAGGCugAu Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCCATCCCTAGTACGA #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCCATCCCTAGTACGA #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGAAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAGACTTGAGGGGAGCTGCCCCTAGTACGA #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ******************************************************************************************************************************************************************************************************** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 CTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGTAGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGTAGGAGACTTGAGGGGAGCCATCCCTAGTACGA #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP ******************************************************************************************************************************************************************************************************** #=GC SS_cons <<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},,,,((((((((--((((,,<<<<<<<________ #=GC RF cccgcCCAAGaGUuCAuAuCGACGgcggggUUUgGCACCUCGAUGUCgGCUCguCgCAUCCUGGGgCuGgAGaAgGuCCCAAGGGUucGGCUGUUCGCCgaUUAAAGcGgcACGuGAGCuGGGUUcAGaaCGUCGUGAGACAGuuCGGUCCcUAUCcgccGcGgGCGuagGaggccUGAggGgauccgccccUAGUACGA Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP *************************************************************************************************************************************.99997776.9******************************************************** Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP *************************************************************************************************************************************.99997776.9******************************************************** Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 GAGGACCGGGGCGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTCGTATGGGATAAACGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCTcGTAAGAGGGTAAGGCACCTCGAAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP *************************************************************************************************************************************999999************************************************************* Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 GAGGACCGGGATGGACGAGCCGATGGTGTACCAGTTGCACCGCCAGGTGCACAGCTGGGTAGCCAAGCTTGGAAGGGATAAAGGCTGAAAGCATCTAAGCGTGAAGCCCACCCCAAGATAAGGTCTCCCACCC.GAAAGGGG-TAAGGCACCTTGTAGAAGACGAGGTAGATAGGCCGGGGGTGTAAGAGCGGAAACGCT #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP *************************************************************************************************************************************.99997776.9******************************************************** #=GC SS_cons _______>>>>>>><<<<<<---<<<----<<<<<<<<<<<____>>>>>>-->>>>>---->>>->>>>>>,,<<<----<<<<<___________>>>>>---->>>,))))------)))))))),,<<<._____>>>,(--((((<<<<<_______>>>>>,,,,<<<<<<<<<<<--<--<<<<<____>>>> #=GC RF GAGGACCggggcgggcggaCCucugGUGuacCgGuuGucgcGCcAgcggCauagCcGgGUAGCcauGuccgcaacgGAUAAgCGCUGAAAGCAUcUAAGCGcGAAgCcgacCccAAGAUaAggccuCccucgg.uaaauccguuaAGgccccuggaAGAcuAccaggUuGAuaGgccggcgGUGcAAgcgcgGuAAcgcg Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_08_TTE_RS00250 PP **************************8.999********* Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_13_TTE_RS00395 PP **************************8.999********* Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 CTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_37_TTE_RS07275 PP ***************************.9*********** Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 TTTAGCTGACCGGTACTAATAAGCCGA-GGACTTGACCCT #=GR Caldanaerobacter_subterraneus_MB4_rna_64_TTE_RS10750 PP **************************8.999********* #=GC SS_cons >>--->>>->>>>>->>>,,,))))-),,,}}}}}}}}:: #=GC RF cguAGCcgAccgguACuaAUuggcCgaaaggcuugaccuu //