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AlphaFold Database Structure Extractor

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AlphaFoldDB Structure Extractor

Download AlphaFold predicted structures for your list of proteins with just a single click!

1. Choose the correct query format type
2. Copy and paste your query accessions as text input or upload a file
3. Wait for your job to run
4. Download your zip file with structure files and ID conversions

Warning: Files will be deleted immediately after download.

Select a query type:
(Sample accessions displayed in text input space for each query type)

Old Locus Tags Locus Tags UniProt IDs Taxonomy IDs RefSeq Protein IDs AlphaFold IDs

Select output file format:

PDB files CIF files bCIF files Predicted Aligned Error files All formats

Paste your queries as text or upload a file:

Text Input File Upload

Insert Input Accessions (New line-separated):

Upload File with Locus Tags:

Type in your email ID to be notified when your job is completed:
(It would take ~60 minutes to download structure files of 1000 locus tags)