AFDB Extractor

API:

This service allows you download structures programatically on your terminal.

Template URL for single accession as input:
https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/<id-type>/<id>

Template URL for multiple accessions as input:
https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/<id-type>

<id-type>: oldlocustag / locustag / uniprot / alphafold / refseq / taxonomy

For multiple accessions, only ids and optionally format are accepted in request body. format deafaults to 'pdb'.

ids : Comma seperated values. Spaces and '_' are tolerated. Unsupported symbols are converted to '_'.
format : [pdb] / cif / bcif / pae / all

Examples:

Single accession as input:


    curl -JL  https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag/MXAN_1028 > structures.zip 


    wget  --output-document=structures.zip https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag/MXAN_1028

Multiple accessions as input:

IDS=$(cat input.txt | xargs | sed 's/ /,/g')

 curl -OJL -d "ids=$IDS" https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag 
    	 

    	curl -JL -d "ids=$IDS&&format=bcif" https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag > sample.zip
    	 

    	curl -JL -d "ids=$IDS" -d "format=bcif" https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag > sample.zip
    	
    	

    	

        
    	wget --post-data="ids=$IDS" --content-disposition --trust-server-names https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag 
 

wget --post-data="ids=$IDS&format=bcif" --output-document=sample.zip https://project.iith.ac.in/sharmaglab/alphafoldextractor/api/oldlocustag