Toggle navigation
CD-NuSS
Home
NuSS prediction
Documentation
NuSS prediction
Example
NA spectra
Tutorial
CD-NuSS
Circular Dichroism to Nucleic acids Secondary Structure
Circular dichroism (CD) spectral input file
230 to 315 nm range
Select the algorithm (Xgboost is preferable)
XGBoost algorithm
nnet (Neural Network) algorithm
Supersom kohonen algorithm
Upload the spectral file (.txt file should contain 2 columns of data with proper uniform spacing in between two columns) to predict the secondary structure of nucleic acid
Note: For ignoring the spacing problems in input file, use excel
1) Copy and paste your data in excel
2) Copy the pasted data from excel and paste it in notepad to create final input file (.txt)
Example CD spectral file:
Click to see example CD spectral file