Streptomyces Californicus Adr1

  1. Analysis
  2. Results

Summary

Total BGC

81+ Rule based prediction

36

Similar to known BGC

Based on reference similarity

25

Top N Score

10 BGCs have N score > 0.5

0.56

Product Categories

Distribution of Cluster types

Distance to GCF

28

Compared to 29995+ known GCFs

No MiBiG Hits

11

2500+ experimentally validated BGCs

Not on contig edge

23

Incomplete BGCs

AMR Gene presence

1

6480 AMR detection models

Genome Statistics

Genome Size

149 Contigs

8.35 Mb

BGC Length

36 Regions

1.05 Mb

Total ORF Count

871.0 In BGCs

6,933

Biosynthetic Potential

36 Ratio

12.6%

Contigs with BGCs

33

With BGCs

116

Without BGCs

ORF Distribution

871.0

ORFs in BGCs

6062.0

Other ORFs

Biosynthetic Potential

12.6%

BGC Genome

87.4%

Other Genome

Genome Assembly Summary
Assembly Streptomyces_californicus_ADR1
Total Contigs 181
Largest Contig 285,075
Total Length 8,371,052
GC Content 72.34
N50 115,513
N90 38,143
L50 25
L90 70
QUAST Graphs

BGC Distribution

BGC Features

Region Start End Product Contig Edge MiBiG Distance : GCF AMR Gene (N) (RS)
2.1 207258 217684 melanin False
731.0 : GCF_00096 0.0 0.76
5.1 69448 112289 NRPS-like False
205.0 : GCF_04385 0.52 0.32
6.1 73385 94363 terpene False No hits 667.0 : GCF_09234 0.56 0.29
8.1 0 47412 T2PKS True
954.0 : GCF_00455 0.02 0.6
9.1 135028 179919 ladderane True
687.0 : GCF_01105 0.28 0.37
10.1 4244 47688 T1PKS False No hits 846.0 : GCF_01099 0.56 0.29
12.1 112180 123650 RiPP-like False No hits 545.0 : GCF_00876 0.56 0.29
13.1 67732 104836 terpene False
85.0 : GCF_04386 0.0 0.76
15.1 9101 58575 NRPS False
1177.0 : GCF_10511 0.14 0.67
18.1 30067 41846 siderophore False
872.0 : GCF_00640 0.0 0.76
18.2 99257 130823 lanthipeptide-class-iii False No hits 871.0 : GCF_03310 0.56 0.29
20.1 71395 104636 LAP False No hits 342.0 : GCF_13141 0.56 0.29
21.1 27155 70305 NRPS-like False No hits 875.0 : GCF_04389 0.56 0.29
23.1 7771 55028 NRPS False
511.0 : GCF_04390 0.52 0.31
24.1 20272 30746 melanin False
493.0 : GCF_02111 0.0 0.76
25.1 8597 79353 NRPS False
692.0 : GCF_04388 0.46 0.37
26.1 71913 82312 ectoine False
870.0 : GCF_00822 0.0 0.76
28.1 58002 73470 butyrolactone False
915.0 : GCF_00861 0.3 0.5
29.1 53349 68236 siderophore False No hits 434.0 : GCF_13384 0.56 0.29
30.1 0 34127 phosphonate True
333.0 : GCF_03015 0.4 0.26
30.2 72108 104959 T1PKS True
796.0 : GCF_01098 0.44 0.24
31.1 0 36719 NRPS True
1015.0 : GCF_03887 0.15 0.49
31.2 75946 98181 terpene False
491.0 : GCF_01102 0.0 0.76
32.1 43297 84350 T3PKS False
562.0 : GCF_01097 0.49 0.34
35.1 64519 93352 T3PKS True No hits 1052.0 : GCF_00789 0.5 0.19
48.1 46955 76030 T3PKS True
793.0 : GCF_01100 0.42 0.25
49.1 44484 55411 butyrolactone False
299.0 : GCF_02740 0.49 0.34
54.1 40433 63187 lanthipeptide-class-iii False
914.0 : GCF_01133 0.01 0.76
56.1 0 25467 thiopeptide True No hits 1088.0 : GCF_04023 0.52 0.18
57.1 0 26548 terpene True
741.0 : GCF_01018 0.14 0.49
60.1 21624 44448 lassopeptide False
372.0 : GCF_01096 0.0 0.76
61.1 756 51697 NRPS False
831.0 : GCF_18518 0.11 0.67
70.1 0 38143 NRPS True
638.0 : GCF_00326 0.04 0.65
88.1 0 17008 T1PKS True No hits 945.0 : GCF_11098 0.46 0.22
102.1 0 9777 lanthipeptide-class-i True No hits 416.0 : GCF_17627 0.44 0.23
131.1 0 2135 siderophore True
583.0 : GCF_00640 0.18 0.46
antiSMASH Region View

BGC Prioritization

Distance of BGCs to knonw GCFs
Open in Full Screen
Referernce Similarity (RS) and Novelty (N) Scores
N vs RS Scatter
CARD-RGI AMR Results
ORF_ID Contig Best_Hit_ARO ARO Drug Resistance Mechanism AMR Gene Family Antibiotic Predicted_Protein CARD_Protein_Sequence
c00070_NODE_70...region001|ctg70_11 c00070_NODE_70...region001 vph 3003061 peptide antibiotic antibiotic inactivation viomycin phosphotransferase viomycin
Downloads & Process Logs
antiSMASH Results

Complete BGC analysis output

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QUAST Results

Assembly quality metrics

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CARD-RGI Results

Antimicrobial resistance data

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Process Logs

View execution logs (8)