AlphaFoldDB Structure Extractor

Download AlphaFold predicted structures for your list of proteins with just a single click!

1. Choose the correct query format type
2. Copy and paste your query accessions as text input or upload a file
3. Wait for your job to run
4. Download your zip file with structure files and ID conversions

Warning:

Max 5000 IDs (Use REST API for larger sets).
Files will be deleted immediately after download (or after 2 days).

Cite this article:
Saraf, N., Karthik, V. & Sharma, G. AlphaFold Database Structure Extractor: a web server and API to download AlphaFold structures using common protein accessions. BMC Bioinformatics 26, 305 (2025). https://doi.org/10.1186/s12859-025-06303-0

AlphaFoldDB Structure Extractor

Select a query type:
(Sample accessions displayed in text input space for each query type)

Select output file format:

Paste your queries as text or upload a file:

AlphaFoldDB Structure Extractor

Select a query type: (Sample accessions displayed in text input space for each query type)

Select output file format:

Paste your queries as text or upload a file:

Select a query type:
(Sample accessions displayed in text input space for each query type)